#include <Data1D_collection.h>

Inheritance diagram for cbl::data::Data1D_collection:

Collaboration diagram for cbl::data::Data1D_collection:

Public Member Functions
Constructors/destructors
	Data1D_collection ()
	default constructor More...

	Data1D_collection (const std::string input_file, const int skip_header=0)
	constructor which reads the data from file More...

	Data1D_collection (const std::vector< std::string > input_files, const int skip_header=0)
	constructor which reads the data from a vector of input files More...

	Data1D_collection (const std::vector< std::vector< double >> xx, const std::vector< std::vector< double >> data)
	constructor which gets the data from input matrices More...

	Data1D_collection (const std::vector< std::vector< double >> xx, const std::vector< std::vector< double >> data, const std::vector< std::vector< double >> covariance)
	constructor which gets both the data and the covariance matrix from input matrices More...

	Data1D_collection (const std::vector< std::vector< double >> xx, const std::vector< double > data, const std::vector< double > error)
	constructor which gets both the data and the errors from input vectors More...

	Data1D_collection (const std::vector< std::vector< double >> xx, const std::vector< double > data, const std::vector< std::vector< double >> covariance)
	constructor which gets both the data and the covariance matrix from input vectors More...

virtual	~Data1D_collection ()=default
	default destructor

std::shared_ptr< Data >	as_factory ()
	static factory used to construct objects of class Data1D More...

Member functions used to get the private members
int	xsize (const int i) const
	get the number of points along x More...

double	xx (const int i, const int j) const
	get value of x at index j in the i-th dataset More...

void	xx (std::vector< std::vector< double > > x) const
	get x values More...

std::vector< std::vector< double > >	IndipendentVariable (const int i=-1, const int j=-1) const
	get the independet variable, to be used in model computation More...

double	data (const int i, const int j) const
	get data at index i,j More...

void	data (std::vector< std::vector< double >> &data) const
	get data More...

double	error (const int i, const int j) const
	get value of f(x) error at index i,j More...

void	error (std::vector< std::vector< double >> &error) const
	get standard deviation More...

Member functions used to set the private members
void	set_xx (const int i, const std::vector< double > x)
	set interval variable m_x in the i-th dataset More...

Member functions to compute data properties
int	ndataset () const
	function that returns total number of datasets More...

void	read (const std::string input_file, const int skip_nlines=0, const std::vector< int > column={1}, const std::vector< int > column_data={}, const std::vector< int > column_errors={}, const std::vector< int > column_edges={}) override
	read the data More...

void	read (const std::vector< std::string > input_files, const int skip_nlines=0, const std::vector< int > column={1}, const std::vector< int > column_data={}, const std::vector< int > column_errors={}, const std::vector< int > column_edges={}) override
	read the data More...

virtual void	Print (const int precision=4) const override
	print the data on screen More...

void	write (const std::string dir, const std::string file, const std::string header, const int prec=4, const int ww=8, const int rank=0) const override
	write the data More...

void	write (const std::string dir, const std::vector< std::string > files, const std::string header, const int precision=10, const int ww=8, const int rank=0) const override
	write the data More...

void	write_covariance (const std::string dir, const std::string file, const int precision=10) const override
	write the interval variable m_covariance on a file, More...

Member functions for data cut
std::shared_ptr< Data >	cut (const int dataset, const double xmin, const double xmax) const override
	cut the data, for Data1D_collection More...

std::shared_ptr< Data >	cut (const std::vector< double > xmin, const std::vector< double > xmax) const override
	cut the data, for Data1D_collection type More...

Public Member Functions inherited from cbl::data::Data
double	correlation (const int i, const int j) const
	get the value of the data correlation at index i,j More...

std::vector< std::vector< double > >	correlation () const
	get the value of the data correlation at index i,j More...

double	inverse_covariance (const int i, const int j) const
	get the value of data inverse_covariance at index i,j More...

std::vector< std::vector< double > >	inverse_covariance () const
	get the m_inverse_covariance std::vector More...

void	reset (const int ndata)
	reset data object with new empty arrays large enough to store ndata data More...

virtual void	invert_covariance (const double prec, const int Nres)
	invert the covariance matrix More...

virtual double	xx (const int i) const
	get value of x at index i More...

virtual std::vector< double >	xx () const
	get the x std::vector More...

virtual double	yy (const int i) const
	get value of y at index i, for Data2D More...

virtual std::vector< double >	yy () const
	get the y std::vector More...

virtual void	get_data (std::vector< double > &data) const
	get data for Data1D More...

virtual DataType	dataType () const
	get the data type More...

virtual int	ndata () const
	the total number of data More...

virtual double	data (const int i) const
	get data at index i More...

virtual std::vector< double >	data () const
	get data More...

virtual double	error (const int i) const
	get value of data standard deviation at index i More...

virtual std::vector< double >	error () const
	get standard deviation More...

virtual double	covariance (const int i, const int j) const
	get the value of the data covariance at index i,j More...

virtual std::vector< std::vector< double > >	covariance () const
	get the m_covariance vector More...

virtual double	edges_xx (const int i) const
	get value of x variable bin edge at index i More...

virtual std::vector< double >	edges_xx () const
	get x variable bin edges More...

virtual double	edges_yy (const int i) const
	get value of y variable bin edge at index i More...

virtual std::vector< double >	edges_yy () const
	get y variable bin edges More...

virtual void	get_data (std::vector< std::vector< double >> &data) const
	get data for Data1D_collection, Data2D More...

virtual void	get_error (std::vector< double > &error) const
	get standard deviation for Data1D More...

virtual void	get_error (std::vector< std::vector< double >> &error) const
	get standard deviation for Data1D_Collection, Data2D More...

virtual double	extra_info (const int i, const int j) const
	return the value of the extra information at index i,j More...

virtual std::vector< std::vector< double > >	extra_info () const
	return the m_exta_info std::vector More...

virtual void	set_xx (const std::vector< double > x)
	set interval variable m_x More...

virtual void	set_yy (const std::vector< double > y)
	set interval variable m_y, for Data2D More...

virtual void	set_xx (const std::vector< std::vector< double >> x)
	set interval variable m_x, for Data1D_collection More...

virtual void	set_edges_xx (const std::vector< double > edges)
	set interval variable m_edges_xx More...

virtual void	set_edges_yy (const std::vector< double > edges)
	set interval variable m_edges_yy More...

virtual void	set_data (const std::vector< std::vector< double >> data)
	set interval variable m_data, for Data1D_collection, Data2D More...

virtual void	set_extra_info (const std::vector< std::vector< double >> extra_info)
	set interval variable m_error_fx More...

void	set_data (const std::vector< double > data)
	set interval variable data More...

void	set_error (const std::vector< double > error)
	set interval variable m_error_fx More...

void	set_error (const std::vector< std::vector< double >> covariance)
	set interval variable m_error_fx More...

void	set_covariance (const std::string filename, const int cov_col=2, const int skipped_lines=0)
	set the interval variable m_covariance, reading from an input file More...

void	set_covariance (const double value, const int i, const int j)
	set interval the variable m_covariance More...

void	set_covariance (const std::vector< std::vector< double >> covariance)
	set interval the variable m_covariance More...

void	set_covariance (const std::vector< double > error)
	set interval the variable m_covariance More...

virtual int	ndata (const int i) const
	function that returns number of data for one dataset, for Data1D_collection More...

virtual int	xsize () const
	get the number of points along x More...

virtual int	ysize () const
	get the number of points along y More...

virtual void	write (const std::string dir, const std::string file, const std::string header, const bool full, const int prec=10, const int ww=8, const int rank=0) const
	write the data More...

void	cut (const std::vector< bool > mask, std::vector< double > &data, std::vector< double > &error, std::vector< std::vector< double >> &covariance_matrix) const
	cut the dataset using a mask More...

virtual std::shared_ptr< Data >	cut (const std::vector< bool > mask) const
	cut the data, for Data1D More...

virtual std::shared_ptr< Data >	cut (const double xmin, const double xmax) const
	cut the data, for Data1D More...

virtual std::shared_ptr< Data >	cut (const double xmin, const double xmax, const double ymin, const double ymax) const
	cut the data, for Data2D More...

	Data ()=default
	default constructor

	Data (const DataType dataType)
	constructor which sets only the data type More...

	Data (const DataType dataType, const int ndata)
	constructor which sets both the data type and the number of data More...

	Data (const DataType dataType, const std::vector< double > data)
	constructor which gets the data from an input vector More...

	Data (const DataType dataType, const std::vector< double > data, const std::vector< double > error)
	constructor which gets both the data and the errors from input vectors More...

	Data (const DataType dataType, const std::vector< double > data, const std::vector< std::vector< double >> covariance)
	constructor which gets both the data and the covariance matrix from input vectors More...

virtual	~Data ()=default
	default destructor

Protected Attributes
Data input
int	m_ndataset
	The number of datasets.

std::vector< int >	m_xsize
	vector containing the number of data in each dataset

std::vector< std::vector< double > >	m_x
	vector containing indipendent variables

std::vector< std::vector< int > >	m_index
	vector containing matrix-to-vector indexes

Protected Attributes inherited from cbl::data::Data
DataType	m_dataType
	type of data

int	m_ndata
	number of data

std::vector< double >	m_data
	data values

std::vector< double >	m_error
	standard deviations

std::vector< double >	m_edges_xx
	bin edges for the x variable

std::vector< double >	m_edges_yy
	bin edges for the y variable

std::vector< std::vector< double > >	m_covariance
	covariance matrix

std::vector< std::vector< double > >	m_inverse_covariance
	inverse covariance matrix

Additional Inherited Members
Static Public Member Functions inherited from cbl::data::Data
static std::shared_ptr< Data >	Create (const DataType dataType)
	static factory used to construct objects of class Data1D More...

Protected Member Functions inherited from cbl::data::Data
void	set_dataType (const DataType dataType)
	set the data type More...

Detailed Description

The class Data1D_collection.

"Headers/Data1D_collection.h"

This is the base class used to manage collections of 1D data

Definition at line 50 of file Data1D_collection.h.

Constructor & Destructor Documentation

◆ Data1D_collection() [1/7]

cbl::data::Data1D_collection::Data1D_collection ( )

inline

default constructor

1D

Definition at line 85 of file Data1D_collection.h.

◆ Data1D_collection() [2/7]

cbl::data::Data1D_collection::Data1D_collection	(	const std::string	input_file,
		const int	skip_header = `0`
	)

constructor which reads the data from file

Parameters

input_file	file with datasets
skip_header	number of lines to be skipped

1D_collection

Definition at line 45 of file Data1D_collection.cpp.

◆ Data1D_collection() [3/7]

cbl::data::Data1D_collection::Data1D_collection	(	const std::vector< std::string >	input_files,
		const int	skip_header = `0`
	)

constructor which reads the data from a vector of input files

Parameters

input_files	files with datasets
skip_header	number of lines to be skipped

1D_collection

Definition at line 55 of file Data1D_collection.cpp.

◆ Data1D_collection() [4/7]

cbl::data::Data1D_collection::Data1D_collection	(	const std::vector< std::vector< double >>	xx,
		const std::vector< std::vector< double >>	data
	)

constructor which gets the data from input matrices

Parameters

xx	vector containing the independent variable xx for each dataset
data	vector containing the data for each dataset

1D_collection

Definition at line 65 of file Data1D_collection.cpp.

◆ Data1D_collection() [5/7]

cbl::data::Data1D_collection::Data1D_collection	(	const std::vector< std::vector< double >>	xx,
		const std::vector< std::vector< double >>	data,
		const std::vector< std::vector< double >>	covariance
	)

constructor which gets both the data and the covariance matrix from input matrices

Parameters

xx	vector containing the independent variable xx for each dataset
data	vector containing the data for each dataset
covariance	vector containing the data covariance

1D_collection

Definition at line 100 of file Data1D_collection.cpp.

◆ Data1D_collection() [6/7]

cbl::data::Data1D_collection::Data1D_collection	(	const std::vector< std::vector< double >>	xx,
		const std::vector< double >	data,
		const std::vector< double >	error
	)

constructor which gets both the data and the errors from input vectors

Parameters

xx	vector containing the independent variable xx for each dataset
data	vector containing the data for each dataset
error	vector containing the data error

1D_collection

Definition at line 144 of file Data1D_collection.cpp.

◆ Data1D_collection() [7/7]

cbl::data::Data1D_collection::Data1D_collection	(	const std::vector< std::vector< double >>	xx,
		const std::vector< double >	data,
		const std::vector< std::vector< double >>	covariance
	)

constructor which gets both the data and the covariance matrix from input vectors

Parameters

xx	vector containing the independent variable xx for each dataset
data	vector containing the data for each dataset
covariance	vector containing the data covariance

1D_collection

Definition at line 174 of file Data1D_collection.cpp.

Member Function Documentation

◆ as_factory()

std::shared_ptr<Data> cbl::data::Data1D_collection::as_factory ( )

inlinevirtual

static factory used to construct objects of class Data1D

Returns: a shared pointer to an object of class Data

Reimplemented from cbl::data::Data.

Definition at line 178 of file Data1D_collection.h.

◆ cut() [1/2]

shared_ptr< Data > cbl::data::Data1D_collection::cut	(	const int	dataset,
		const double	xmin,
		const double	xmax
	)		const

overridevirtual

cut the data, for Data1D_collection

Parameters

dataset	the i-th dataset
xmin	minumum value for the independet variable x
xmax	maximum value for the independent variable x

Returns: pointer to an object of type Data1D

Reimplemented from cbl::data::Data.

Definition at line 444 of file Data1D_collection.cpp.

◆ cut() [2/2]

shared_ptr< Data > cbl::data::Data1D_collection::cut	(	const std::vector< double >	xmin,
		const std::vector< double >	xmax
	)		const

overridevirtual

cut the data, for Data1D_collection type

Parameters

xmin	vector containing minumum values for the independet variable x
xmax	vector containing maximum values for the independent variable x

Returns: pointer to an object of type Data1D_collection

Reimplemented from cbl::data::Data.

Definition at line 482 of file Data1D_collection.cpp.

◆ data() [1/2]

double cbl::data::Data1D_collection::data	(	const int	i,
		const int	j
	)		const

inlinevirtual

get data at index i,j

Parameters

i	index
j	index

Returns: the value of the m_data vector at position i,j

Reimplemented from cbl::data::Data.

Definition at line 230 of file Data1D_collection.h.

◆ data() [2/2]

void cbl::data::Data1D_collection::data ( std::vector< std::vector< double >> & data ) const

get data

Parameters

[out] data vector containing the dataset

Definition at line 207 of file Data1D_collection.cpp.

◆ error() [1/2]

double cbl::data::Data1D_collection::error	(	const int	i,
		const int	j
	)		const

inlinevirtual

get value of f(x) error at index i,j

Parameters

i	index
j	index

Returns: the value of the m_error vector at position i,j

Reimplemented from cbl::data::Data.

Definition at line 248 of file Data1D_collection.h.

◆ error() [2/2]

void cbl::data::Data1D_collection::error ( std::vector< std::vector< double >> & error ) const

get standard deviation

Parameters

[out] error vector containing the error

Definition at line 224 of file Data1D_collection.cpp.

◆ IndipendentVariable()

std::vector<std::vector<double> > cbl::data::Data1D_collection::IndipendentVariable	(	const int	i = `-1`,
		const int	j = `-1`
	)		const

inlinevirtual

get the independet variable, to be used in model computation

Parameters

i	index (not used)
j	index (not used)

Returns: the independent variable

Reimplemented from cbl::data::Data.

Definition at line 219 of file Data1D_collection.h.

◆ ndataset()

int cbl::data::Data1D_collection::ndataset ( ) const

inlinevirtual

function that returns total number of datasets

Returns: total number of dataset

Reimplemented from cbl::data::Data.

Definition at line 284 of file Data1D_collection.h.

◆ Print()

void cbl::data::Data1D_collection::Print ( const int precision = 4 ) const

overridevirtual

print the data on screen

Parameters

precision the float precision

Reimplemented from cbl::data::Data.

Definition at line 360 of file Data1D_collection.cpp.

◆ read() [1/2]

void cbl::data::Data1D_collection::read	(	const std::string	input_file,
		const int	skip_nlines = `0`,
		const std::vector< int >	column = `{1}`,
		const std::vector< int >	column_data = `{}`,
		const std::vector< int >	column_errors = `{}`,
		const std::vector< int >	column_edges = `{}`
	)

overridevirtual

read the data

Parameters

input_file	input data file
skip_nlines	the header lines to be skipped
column	vector containing the column of x values in the input file; if it is not provided, the first column will be used by default
column_data	the column of data values in the input file; the size of column_data is the number of data to be read (e.g. the size should be 3 in the case of the 3 multipole moments of the two-point correlation function); if the size of column_data is larger than 1, more than 1 data vectors are read and then added one after the other in a single data object; if column_data is not provided, the second column will be used by default, assuming that only 1 data vector has to be read
column_errors	the column of error values in the input file; the size of column_error must be equal to the size of column_data; if the size of column_error is larger than 1, more than 1 error vectors are read and then added one after the other in a single data object; if column_random is not provided, the third column will be used by default, assuming that only 1 random vector has to be read; if the input file has only 2 columns, the errors will be set to 1
column_edges	vector containing the columns of x bin edge values in the input file; if it is not provided, the third and four columns after the column of x values will be used; if these columns do no exist the edges are not read

Warning: column, column_data, column_errors, column_edges are not used in the current implementation: work in progress!

Reimplemented from cbl::data::Data.

Definition at line 241 of file Data1D_collection.cpp.

◆ read() [2/2]

void cbl::data::Data1D_collection::read	(	const std::vector< std::string >	input_files,
		const int	skip_nlines = `0`,
		const std::vector< int >	column = `{1}`,
		const std::vector< int >	column_data = `{}`,
		const std::vector< int >	column_errors = `{}`,
		const std::vector< int >	column_edges = `{}`
	)

overridevirtual

read the data

Parameters

input_files	input data files
skip_nlines	the header lines to be skipped
column	vector containing the column of x values in the input file; if it is not provided, the first column will be used by default
column_data	the column of data values in the input file; the size of column_data is the number of data to be read (e.g. the size should be 3 in the case of the 3 multipole moments of the two-point correlation function); if the size of column_data is larger than 1, more than 1 data vectors are read and then added one after the other in a single data object; if column_data is not provided, the second column will be used by default, assuming that only 1 data vector has to be read
column_errors	the column of error values in the input file; the size of column_error must be equal to the size of column_data; if the size of column_error is larger than 1, more than 1 error vectors are read and then added one after the other in a single data object; if column_random is not provided, the third column will be used by default, assuming that only 1 random vector has to be read; if the input file has only 2 columns, the errors will be set to 1
column_edges	vector containing the columns of x bin edge values in the input file; if it is not provided, the third and four columns after the column of x values will be used; if these columns do no exist the edges are not read

Warning: column, column_data, column_errors, column_edges are not used in the current implementation: work in progress!

Reimplemented from cbl::data::Data.

Definition at line 304 of file Data1D_collection.cpp.

◆ set_xx()

void cbl::data::Data1D_collection::set_xx	(	const int	i,
		const std::vector< double >	x
	)

inlinevirtual

set interval variable m_x in the i-th dataset

Parameters

i	index to the i-th dataset
x	vector containing x points

Reimplemented from cbl::data::Data.

Definition at line 271 of file Data1D_collection.h.

◆ write() [1/2]

void cbl::data::Data1D_collection::write	(	const std::string	dir,
		const std::string	file,
		const std::string	header,
		const int	prec = `4`,
		const int	ww = `8`,
		const int	rank = `0`
	)		const

overridevirtual

write the data

Parameters

dir	output directory
file	output file
header	text with the variable names to be written at the first line of the output file
prec	the float precision
ww	number of characters to be used as field width
rank	cpu index (for MPI usage)

Reimplemented from cbl::data::Data.

Definition at line 380 of file Data1D_collection.cpp.

◆ write() [2/2]

void cbl::data::Data1D_collection::write	(	const std::string	dir,
		const std::vector< std::string >	files,
		const std::string	header,
		const int	precision = `10`,
		const int	ww = `8`,
		const int	rank = `0`
	)		const

overridevirtual

write the data

Parameters

dir	output directory
files	output files
header	text with the variable names to be written at the first line of the output file
precision	the float precision
ww	number of characters to be used as field width
rank	cpu index (for MPI usage)

Reimplemented from cbl::data::Data.

Definition at line 413 of file Data1D_collection.cpp.

◆ write_covariance()

void cbl::data::Data1D_collection::write_covariance	(	const std::string	dir,
		const std::string	file,
		const int	precision = `10`
	)		const

overridevirtual

write the interval variable m_covariance on a file,

Parameters

dir	the output directory
file	the output file
precision	the float precision

Reimplemented from cbl::data::Data.

Definition at line 527 of file Data1D_collection.cpp.

◆ xsize()

int cbl::data::Data1D_collection::xsize ( const int i ) const

inlinevirtual

get the number of points along x

Parameters

i	index to the i-th dataset

Returns: the number of points along x

Reimplemented from cbl::data::Data.

Definition at line 188 of file Data1D_collection.h.

◆ xx() [1/2]

double cbl::data::Data1D_collection::xx	(	const int	i,
		const int	j
	)		const

inlinevirtual

get value of x at index j in the i-th dataset

Parameters

i	the i-th dataset
j	index

Returns: the value of the x vector at position j in the i-th dataset

Reimplemented from cbl::data::Data.

Definition at line 200 of file Data1D_collection.h.

◆ xx() [2/2]

void cbl::data::Data1D_collection::xx ( std::vector< std::vector< double > > x ) const

inline

get x values

Parameters

x	[out] the x values

Definition at line 207 of file Data1D_collection.h.

The documentation for this class was generated from the following files:

Headers/Data1D_collection.h
Data/Data1D_collection.cpp

Public Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ Data1D_collection() [1/7]

◆ Data1D_collection() [2/7]

◆ Data1D_collection() [3/7]

◆ Data1D_collection() [4/7]

◆ Data1D_collection() [5/7]

◆ Data1D_collection() [6/7]

◆ Data1D_collection() [7/7]

Member Function Documentation

◆ as_factory()

◆ cut() [1/2]

◆ cut() [2/2]

◆ data() [1/2]

◆ data() [2/2]

◆ error() [1/2]

◆ error() [2/2]

◆ IndipendentVariable()

◆ ndataset()

◆ Print()

◆ read() [1/2]

◆ read() [2/2]

◆ set_xx()

◆ write() [1/2]

◆ write() [2/2]

◆ write_covariance()

◆ xsize()

◆ xx() [1/2]

◆ xx() [2/2]